Tech Talk: Epidemic Modeling with Bayesian Networks
BayesiaLab Tech Talk Overview
Compartmental models represent the most common approach for characterizing the development of an epidemic. In an earlier webinar, we introduced a compartmental S-I-R-D model and created a highly-simplified Bayesian network to illustrate the principles. Given its great relevance, we believe the topic warrants a more detailed explanation beyond the initial "toy model."
For the purpose of this BayesiaLab Tech Talk, we present a more comprehensive S-E-I-R-D model. Each letter denotes a compartment (or state) of individuals in a population:
- S: number of susceptible
- E: number of exposed
- I: number of infected
- R: number recovered
- D: number of dead
Additionally, we further differentiate within the states of exposed and infected to account for contagiousness and disease severity.
In standard models, a set of differential equations describes how individuals move between the compartments/states. In this Tech Talk, we implement the differential equations as probabilistic, temporal relationships between nodes in a Bayesian network.
While we often use fictional values in webinars to emphasize methodology over the subject matter, we take a different approach here: The numerical values and parameters presented in this Tech Talk are derived from current COVID-19 observations in France. As a result, the model attempts to represent the actual pandemic situation in France and forecast the pandemic progression.
Presentation Video
Presentation Materials
S2E3IRD.pdf (opens in a new tab)
S2E3IRD_France_h2_Scenarios.xbl (opens in a new tab)
SEIRD_d.xbl (opens in a new tab)
SEIRD_h.xbl (opens in a new tab)
OptimizationSEIRD_OptADR.py